rs30357258 SNP Detail

Summary

• ID
  rs30357258
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7432199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAA TCCGTAATCT CTCCCCTACA
  Y
  GTCCTCCTTG CTTCTCTGTC ATCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45420258	mCV23344981	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss134555761	ENSMUSSNP1515666	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss320642058	CHEV_3_7367139	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30357258					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7432199 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12953	CpG island 12953	191 bp distal
Pkia	protein kinase inhibitor, alpha	within coordinates
Rr573236	regulatory region 573236	1705 bp distal
Rr573237	regulatory region 573237	459 bp distal
Rr573238	regulatory region 573238	within coordinates
Tssr814	transcription start site region 814	473 bp downstream
Tssr28292	transcription start site region 28292	545 bp downstream
Tssr28293	transcription start site region 28293	498 bp downstream
Tssr28294	transcription start site region 28294	445 bp downstream
Tssr28295	transcription start site region 28295	426 bp downstream