rs30357447 SNP Detail

Summary

• ID
  rs30357447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100977601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATT TCTAGAGAAA ACATGTAGGG
  Y
  CAGTCAGCTG CCTCAGTTTC TGGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45421988	mCV23026860	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
ss135544048	ENSMUSSNP5017230	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30357447					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100977601 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptgfrn	prostaglandin F2 receptor negative regulator			Intron
				Noncoding-Transcript-Variant
Rr581951	regulatory region 581951			847 bp distal
Rr581952	regulatory region 581952			within coordinates