rs30357548 SNP Detail

Summary

• ID
  rs30357548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:76130575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATTTCAG TGGGGCTGTG
  TTGCTCTCAG CCTCTCTCTT AATCCAGTGG CTCCGTTTAC TTGGGACGAG TTTTCTCAAA
  CACTTGGCAA ATCAAGGTAC AGCTGGGTTT CTCCTGTCAC TGATGAATTT GTCACATAAA
  TGCTTTACTC CAGGGCTACT TTTTCATGGC TGTTCTTCCA ATGAACTTAA TGCTATGCCC
  R
  GGCGTGCTCT TCCCTTGGAA AGGGTGCTGT TTATCAACAT TAAGCCTAGG CACTGTACCA
  AGGCAACAGG CAACCAGTTC AGAGTGGGGA CACTGTAGAC TCCATTGGCA GGCTCCTGAC
  GTGTGTGACA CTGTGTAAAT GTCCAGGGGA CATGCCGATC CTCTTTCCCT GCCTACAGTC
  CTCTGGAGGG TGTTCTTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39176418	mCV25099802	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss49239561	NES12514971	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		A	A	A	A	A	A	A	A
ss139752800	ENSMUSSNP6274390	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30357548					SNP	G	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49239561	NES12514971	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:76130575 () rs orientation: forward

Symbol	Name	Function Class
Gm52138	predicted gene, 52138	within coordinates
Gm62917	predicted gene, 62917	1489 bp upstream
Rr296309	regulatory region 296309	653 bp distal
Rr300347	regulatory region 300347	32 bp distal