rs30357876 SNP Detail

Summary

• ID
  rs30357876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:89531231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTTTTC TTTTCTTTTC
  TTTTCTTTTC TTTTCTTTCC CGTCTCCCTC CCCCTCCCTT CCCCCTCCTT CTATTAAGTC
  AACTATTTTA TTAACCTAGT TGCCACAAAA ATGAACATTC TGCAAAGATG TCACACAAGG
  CTACAGTATG GATGTGTCTT GTCTTCTGTA GCTTCTGCAG GTCACCCGGT GCTCCTGATT
  Y
  AGCTTCTCTG AGCAGAGACC TTCCTCTGGG TGACTCGGCT CCTTAGACAT GGGGGTTTCT
  AGGTCAGTGC AGGGCCAGGG ATGTCTGTCC TGTGTTGGTT GCAGCCTCTT TGGTGTCAGG
  GGACTGTCTT CCTGGCCTGC TTGGCACCCC TCACCCTTTC CAGCCACCGA CAGAGGAGAA
  GCAGGCCATG GCTTCCAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss49626102	NES12946847	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30357876					SNP	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49626102	NES12946847	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:89531231 () rs orientation: forward

Symbol	Name	Function Class
Agap1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	within coordinates
Rr23524	regulatory region 23524	1170 bp proximal
Rr35151	regulatory region 35151	within coordinates
Tssr8003	transcription start site region 8003	249 bp downstream