rs30357879 SNP Detail

Summary

• ID
  rs30357879
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:89529988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTTGGAGC CCATGTGGGT AGCACAGTCC
  CTGCACCTTT ATTCTGTCCA CTTGGCTATC ATTCATAACC CACTGTCATG ATTAACGAGA
  CTAGTGAAGG AACTGATGTC ACATTTTACA TGTCTAACCT GGAGTCCTTG TAGCCTGTCA
  M
  CACAGGAGGG AGGTCAGGAC CCAGCACCCA CTTTTTCCTT TGTTGAGCTG ACTAAAGACT
  GTTAAGTTct gggaccatag cttggtgtta gagcagttgt ctagtgtgtg gaggccctgt
  gttggttgca ctgcactgca gaaGGGGGGG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss49626105	NES12946947	PERLEGEN	MM_PANEL2	f	SNP	A		C	C
ss319834385	CHEV_1_91498841	CHEVERUD	SCREENING_POP	f	SNP		C			A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs30357879					SNP	A	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49626105	NES12946947	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:89529988 () rs orientation: forward

Symbol	Name	Function Class
Agap1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	within coordinates
Rr35151	regulatory region 35151	within coordinates
Tssr8003	transcription start site region 8003	958 bp upstream