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rs30358226 SNP Detail
Summary
  • ID
    rs30358226
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr14:122344958 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GTGGG GTCGCATTTC GAGCCGCGAC
    R
    GGACGGGGGC CTGCGGACCC CGGGT                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
ss39177866 mCV22559884 ABI CRAMUS_MOUSE f SNP A G G G
ss324857943 CHEV_14_122506768 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
rs30358226 SNP A G G G G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:122344958 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
A330035P11Rik RIKEN cDNA A330035P11 gene 572 bp upstream
Cpgi6888 CpG island 6888 within coordinates
Gm56752 predicted gene, 56752 612 bp downstream
Rr296792 regulatory region 296792 within coordinates
Tm9sf2 transmembrane 9 superfamily member 2 within coordinates
Tssr127315 transcription start site region 127315 502 bp downstream
Tssr127316 transcription start site region 127316 476 bp downstream
Tssr127317 transcription start site region 127317 430 bp downstream
Tssr127318 transcription start site region 127318 374 bp downstream
Tssr130316 transcription start site region 130316 1705 bp upstream
Tssr130317 transcription start site region 130317 619 bp upstream
Tssr130318 transcription start site region 130318 557 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory