rs30358249 SNP Detail

Summary

• ID
  rs30358249
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52246946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTT CCGCACACAG GACAAGGGAA
  R
  CGCCGTTCGC CTGCACGAGT CTCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39177198	mCV24785648	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss139499013	ENSMUSSNP2674190	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss324626573	CHEV_14_52629164	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30358249					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52246946 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6435	CpG island 6435	within coordinates
D14Mit183	DNA segment, Chr 14, Massachusetts Institute of Technology 183	727 bp proximal
Rr369820	regulatory region 369820	642 bp downstream
Rr369821	regulatory region 369821	358 bp downstream
Rr491851	regulatory region 491851	633 bp distal
Rr491852	regulatory region 491852	476 bp distal
Rr491853	regulatory region 491853	424 bp distal
Rr491854	regulatory region 491854	365 bp distal
Tssr128467	transcription start site region 128467	777 bp upstream
Tssr128468	transcription start site region 128468	596 bp upstream
Tssr128469	transcription start site region 128469	503 bp upstream
Tssr128470	transcription start site region 128470	285 bp upstream
Tssr128471	transcription start site region 128471	130 bp downstream
Tssr128472	transcription start site region 128472	162 bp downstream
Tssr128473	transcription start site region 128473	1359 bp downstream
Tssr128474	transcription start site region 128474	1379 bp downstream
Zfp219	zinc finger protein 219	within coordinates