rs30358421 SNP Detail

Summary

• ID
  rs30358421
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:87612240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTAAAAGCC CGCCCCGAGG CGCCCTGGGC TCCGGAGGAG
  TAGCGCTCCG CGTTCAGAAG GGCAGAGAGT GTGGGCGAGC TCGCCGCCGC CTCCCCGGTT
  R
  GCGCACCCAA CTTCTGGGCG TCCGAGCCCT TTTCCGCGCT TTTAGCCCGC GCCCTCCCGC
  ACGCGCCCCG GGGGCCCCTA AAACTTAGAG AAGTGAAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss46399193	mCV24942038	ABI	CRAMUS_MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs30358421					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:87612240 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22111	CpG island 22111	within coordinates
D030062O11Rik	RIKEN cDNA D030062O11 gene	within coordinates
Rr684220	regulatory region 684220	1063 bp proximal
Rr684221	regulatory region 684221	1226 bp proximal
Tbx18	T-box18	within coordinates
Tssr2959	transcription start site region 2959	1050 bp downstream
Tssr90806	transcription start site region 90806	949 bp downstream
Tssr90807	transcription start site region 90807	976 bp downstream
Tssr90808	transcription start site region 90808	1061 bp downstream
Tssr90809	transcription start site region 90809	1087 bp downstream