rs30358693 SNP Detail

Summary

• ID
  rs30358693
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79439393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCTCTTT TGGGAGCTTA
  AAAAAAGGGA TGTTCATTCA TCATGCAAAT GAAGCCCAGG ATGACTTCTA GAAGCGGATG
  TGCTCTCAGT AAACCCATAA TAAAGTAGAC AAGTACAAAT CTCTCCCTGC TTTTTCTCCG
  CCTGCACTCA AGTGCACTCA ACAGGTCCAG CAGCTTGCAC TGACTCACAC CATCTGCATC
  Y
  CGAGCTGAGT TTACAAGCAG CCCTGCCTTC ACTAGTCACG AGCCCAGCTC ATGTGGCTCT
  GGGTAAACCT TCAGCTGCAA GGTTGCTCTG ACATTGGCCG CACCACCCTC TTAATGGTTC
  TCATGTGAGT AAGTATCAGC TGACAGCTTC TACTCCACAA CCTTGCAAAA CTCTGTCCAC
  AGTGAGTGAA GGATGGCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45420782	mCV24189736	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T		T
ss47031426	NES10775818	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		T	T	T	T	T	T	T	T	T
ss135372488	ENSMUSSNP6830871	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30358693					SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47031426	NES10775818	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79439393 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	within coordinates
Rr2009	regulatory region 2009	within coordinates
Rr375221	regulatory region 375221	within coordinates
Rr578538	regulatory region 578538	within coordinates
Tssr29583	transcription start site region 29583	63 bp downstream
Tssr33705	transcription start site region 33705	416 bp upstream
Tssr33706	transcription start site region 33706	398 bp upstream
Tssr33707	transcription start site region 33707	380 bp upstream
Tssr33708	transcription start site region 33708	358 bp upstream
Tssr33709	transcription start site region 33709	340 bp upstream
Tssr33710	transcription start site region 33710	302 bp upstream
Tssr33711	transcription start site region 33711	282 bp upstream
Tssr33712	transcription start site region 33712	244 bp upstream
Tssr33713	transcription start site region 33713	200 bp upstream
Tssr33714	transcription start site region 33714	within coordinates
Tssr33715	transcription start site region 33715	78 bp downstream
Tssr33716	transcription start site region 33716	755 bp downstream