rs30358875 SNP Detail

Summary

• ID
  rs30358875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:38020444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG CAAGAGAGGA TGCTCAGAGT
  Y
  CTCCTTTGAC CTCCACATGC TTATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39672902	mCV24514924	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss146359583	ENSMUSSNP4010650	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss325800776	CHEV_19_38106486	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30358875					SNP	T	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38020444 () rs orientation: forward

Symbol	Name	Function Class
Myof	myoferlin	within coordinates
Rr547220	regulatory region 547220	433 bp distal
Rr547221	regulatory region 547221	657 bp proximal
Tssr156239	transcription start site region 156239	1746 bp downstream
Tssr159104	transcription start site region 159104	1345 bp upstream
Tssr159105	transcription start site region 159105	916 bp downstream