rs30358928 SNP Detail

Summary

• ID
  rs30358928
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55293388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCTATGC TGCCCCTTGG
  GCTTCACTGG TAGGGAGTGG GCTAGGCCTT ACATATGTAT TTCCTGCTCT CTCATGGTTG
  AGATGAATTG GTTCCTTGTC CTTTTGTTTA AAACGGTCCT AGAAGGATAA GAGGCACTCT
  AGAAGTGGAG AGAGGTGTGG TGGTGGTGGT GGCGGGAAGA CAAAGGCATC TGGGACTTAT
  R
  CAAAGACGCT AAGAGTTTAT GTTTAGAGAT TTCTCAATGG CACACCAAAT AGGACTGGAT
  TAATTTCTGT CTTTGAAATC TACTCTTGGA AGGGAGGACC ATGGCCCAAC AATGGCAGTG
  GGAGAGAAGA TGACTCTGTG GAGGACACTC TCCGTTATCT GTGATGACAT ACACCAGCCC
  CCGAACAATT TAACCTCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss39178154	mCV25266510	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	A
ss52722582	NES15565973	PERLEGEN	MM_PANEL2	f	SNP						G		A
ss139576715	ENSMUSSNP6131228	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
ss324641936	CHEV_14_55674768	CHEVERUD	SCREENING_POP	f	SNP							G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs30358928					SNP	G	G	G	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52722582	NES15565973	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55293388 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6483	CpG island 6483	1663 bp distal
Rr492410	regulatory region 492410	1296 bp distal
Rr492411	regulatory region 492411	428 bp distal
Rr492412	regulatory region 492412	524 bp distal
Rr492413	regulatory region 492413	within coordinates
Tssr125746	transcription start site region 125746	1056 bp downstream
Tssr125747	transcription start site region 125747	253 bp downstream
Tssr125748	transcription start site region 125748	56 bp downstream