rs30358990 SNP Detail

Summary

• ID
  rs30358990
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51368050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCTAACTG CCGCTATAGT AGTGATAAGC AATACAAGTT
  CTTCATTGTG GCCTGTGAAC ACCCAAAGAA GGAAGACCCT CCCTACCAAC TAGTGCCTGT
  R
  CACTTAGATA AGATTGTGTG AGGCTAGGCC TTTTCTTCTG TTTGATACAG GTTCTCTTAC
  AGTTTATTCC ACTTTGCCTT CTGTTCCCAC AGAAAAGGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	SM/J
ss39177108	mCV23507607	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		A
ss49182473	NES12491431	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A		G	A	G	A
ss139475215	ENSMUSSNP4677891	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A
ss324621306	CHEV_14_51750268	CHEVERUD	SCREENING_POP	f	SNP													A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	SM/J
rs30358990					SNP	A	A	A	A	A	G	A	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49182473	NES12491431	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51368050 () rs orientation: forward

Symbol	Name	Function Class
Rnase6	ribonuclease, RNase A family, 6	within coordinates
Rr404085	regulatory region 404085	1615 bp downstream
Rr491779	regulatory region 491779	1515 bp distal
Rr491780	regulatory region 491780	432 bp proximal
Rr491781	regulatory region 491781	1856 bp proximal
Tssr125412	transcription start site region 125412	1667 bp downstream
Tssr125413	transcription start site region 125413	1646 bp downstream
Tssr125414	transcription start site region 125414	1600 bp downstream
Tssr125415	transcription start site region 125415	1575 bp downstream
Tssr125416	transcription start site region 125416	1543 bp downstream
Tssr125417	transcription start site region 125417	1521 bp downstream
Tssr125418	transcription start site region 125418	1480 bp downstream
Tssr125419	transcription start site region 125419	1454 bp downstream