rs30359178 SNP Detail

Summary

• ID
  rs30359178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:21574038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTAGGGT GAGGGTCTTA
  TGCCCACACC CACAGTGACA CACCCACTCC AACAAGGCCA CACCTCTAAT AGTGCCACTC
  CCTGGGCCAA GCATATACAA ACCATGACAC TCCCTTTATG TAGGAAGGGC ATGCACTAAG
  CACCTTGTGC AGTGGGTACT CTTTTTACAT GACCAGATTA CGATACTACT CAGGGCAGGG
  Y
  ACCTCACCAA GAGAGAAAAG AAAAAAAGCC GTTTTACTGT AGTGGTTCGA ATGAGAACAC
  AGACATCAGG TATTTGAACC CCTGGTACCC AGTTGGTGGC AATGGTTGGG GAATCTGGAC
  GGTGTGTTTG TTGGAGGAAG TATGTAGCTG GAGGCTGGCT ATGGGAGTTT AAAGGATGGC
  CCTACTTCCA GGTCACTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39673108	mCV24451890	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss50694219	NES13603168	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		T	C	C	T	C	C	C	T
ss146182906	ENSMUSSNP1774071	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30359178					SNP	T	T	C	C	C	T	C	C	T	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50694219	NES13603168	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:21574038 () rs orientation: forward

Symbol	Name	Function Class
1110059E24Rik	RIKEN cDNA 1110059E24 gene	639 bp downstream
Gm38486	predicted gene, 38486	472 bp upstream
Gm59243	predicted gene, 59243	within coordinates
Rr364167	regulatory region 364167	1364 bp proximal