rs30359425 SNP Detail

Summary

• ID
  rs30359425
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:6098245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCT TGGGGACCTG TCAGAATGAT
  K
  AGCCCCAGGC AGGGGAAAGC AGAAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39672802	mCV24718658	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	G
ss146014883	ENSMUSSNP1375693	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G		G
ss325717980	CHEV_19_6048215	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30359425					SNP	T	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6098245 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10491	CpG island 10491			482 bp distal
D530017H19Rik	RIKEN cDNA D530017H19 gene			786 bp upstream
Gm59262	predicted gene, 59262			1726 bp downstream
Rr370438	regulatory region 370438			1523 bp downstream
Rr543277	regulatory region 543277			1543 bp distal
Rr543279	regulatory region 543279			1204 bp distal
Rr543280	regulatory region 543280			1101 bp distal
Rr543281	regulatory region 543281			797 bp distal
Rr543282	regulatory region 543282			886 bp distal
Rr543283	regulatory region 543283			823 bp distal
Rr543284	regulatory region 543284			296 bp distal
Syvn1	synovial apoptosis inhibitor 1, synoviolin			Intron
				Noncoding-Transcript-Variant
Tssr154539	transcription start site region 154539			1570 bp downstream
Tssr154540	transcription start site region 154540			1174 bp downstream
Tssr154541	transcription start site region 154541			1135 bp downstream
Tssr154542	transcription start site region 154542			1112 bp downstream
Tssr157817	transcription start site region 157817			1184 bp upstream
Tssr157818	transcription start site region 157818			791 bp upstream