rs30359472 SNP Detail

Summary

• ID
  rs30359472
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:51459748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGGTAA AATTTAAAGA
  GAACAAATAG CTTAAAAAAA AAAAAACCTA GAACACAGAG TAGCAAAAAG CAACTTATTA
  AGAGGCTTTA AGAAAAAACT GTTTTCTGTT GGAGATGCAG CCTTAATTGC ATAAATACAC
  AAAAATAAAA GTAAAGATGA AGTTAGCTGA GATTTTAAAT GTGTTTAATA AAGAAAGTGA
  M
  AATTTTTCCT AGTGATTTGT GGACATTTTT TTATTTATGT TTAGGTAATA GTTTTTACCC
  CTGGTTACCC TGGGACTTGC AGTATGTACA TTAAGCTGGC CCTATACTGA TTGCAAGCAT
  TAAACCTAGA TTTTGGTGGA TATAGTCAAA GAGAAATATT TCATCACTTT CATTTTTTTC
  TAACTGCAAC ACAACAGTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46940242	NES10939434	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30359472					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46940242	NES10939434	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:51459748 () rs orientation: forward

Symbol	Name	Function Class
Gpc3	glypican 3	within coordinates
Rr4205	regulatory region 4205	148 bp distal
Rr5948	regulatory region 5948	653 bp proximal
Rr5949	regulatory region 5949	1652 bp proximal