rs30359474 SNP Detail

Summary

• ID
  rs30359474
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6546883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG AGAGAGAGAG AGAGAGAGAG
  W
  GTGTCTCCAG TGCCTTTGGG GCTGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39672702	mCV25092841	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30359474					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6546883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10520	CpG island 10520	242 bp proximal
Gm52381	predicted gene, 52381	within coordinates
Nrxn2	neurexin II	within coordinates
Rr543408	regulatory region 543408	485 bp proximal
Tssr154661	transcription start site region 154661	559 bp upstream
Tssr154662	transcription start site region 154662	599 bp upstream
Tssr154663	transcription start site region 154663	734 bp upstream
Tssr154664	transcription start site region 154664	821 bp upstream
Tssr154665	transcription start site region 154665	871 bp upstream
Tssr154666	transcription start site region 154666	905 bp upstream
Tssr154667	transcription start site region 154667	919 bp upstream
Tssr154668	transcription start site region 154668	1024 bp upstream
Tssr154669	transcription start site region 154669	1079 bp upstream
Tssr154670	transcription start site region 154670	1096 bp upstream
Tssr154671	transcription start site region 154671	1171 bp upstream
Tssr154672	transcription start site region 154672	1228 bp upstream
Tssr154673	transcription start site region 154673	1313 bp upstream