rs30359750 SNP Detail

Summary

• ID
  rs30359750
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75367298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTAAAATT TATTTTTGAA GTACTTTTAA AATGGCATAT
  TTTTAATACA GGCTTAAGCA TGGAGCTTAA GAAAGACAGA GAGGCATTCA AAAAGTTTAA
  Y
  GTTTTCTTTC TGTACTGGAT ATTGAAACTC TGGTCTCATG CAAGGCCATA TCACTGAGCC
  AAATCCCCCT GCTTTCCAAT TTGCTTAAAA TTAGAAGTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39177010	mCV24265484	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss139749541	ENSMUSSNP6544455	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss324673212	CHEV_14_75529665	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30359750					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75367298 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6736	CpG island 6736	663 bp proximal
Cpgi6737	CpG island 6737	1236 bp proximal
Gm62951	predicted gene, 62951	512 bp downstream
Lcp1	lymphocyte cytosolic protein 1	1272 bp upstream
Lrrc63	leucine rich repeat containing 63	within coordinates
Rr297500	regulatory region 297500	102 bp proximal
Tssr4477	transcription start site region 4477	769 bp downstream
Tssr126606	transcription start site region 126606	1249 bp upstream
Tssr126607	transcription start site region 126607	1368 bp upstream
Tssr126608	transcription start site region 126608	1415 bp upstream
Tssr126609	transcription start site region 126609	1674 bp upstream
Tssr126610	transcription start site region 126610	1726 bp upstream
Tssr129761	transcription start site region 129761	728 bp downstream
Tssr129762	transcription start site region 129762	750 bp downstream
Tssr129763	transcription start site region 129763	786 bp downstream
Tssr129764	transcription start site region 129764	1050 bp downstream
Tssr129765	transcription start site region 129765	1147 bp downstream
Tssr129766	transcription start site region 129766	1717 bp downstream
Tssr129767	transcription start site region 129767	1759 bp downstream