rs30360303 SNP Detail

Summary

• ID
  rs30360303
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:51460078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTGGTGG ATATAGTCAA
  AGAGAAATAT TTCATCACTT TCATTTTTTT CTAACTGCAA CACAACAGTT ATAAACAACG
  TCAGGGCAAA TTTTCAATGC TAACAGCACA CTCATCCACG ATATTCCAAG AAATACCTGT
  GTTTTCACAC AATTGCCTTT CAGAAATTAC AGAGATTTTA GTAGCAAGAA AGAAAATGCT
  R
  TGGAAGGAAT CAGAAGAATG CAAAGCCATT TACATCTCAT TTTAGAAGAC ATTAACATGG
  TAGGAGAGTA AGTGAGTGTC AATTCATTTC TATCCTTGTT TTAAACCTCA CTTGAGAAAG
  GGCTAAAAGA TTACTCTTGG AATATCAATG ACTTAAATCC AGAGATGCAG TGAATAGTTT
  CTAGCCGGTG AAGAAATTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46940257	NES10939442	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30360303					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46940257	NES10939442	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:51460078 () rs orientation: forward

Symbol	Name	Function Class
Gpc3	glypican 3	within coordinates
Rr4205	regulatory region 4205	478 bp distal
Rr5948	regulatory region 5948	323 bp proximal
Rr5949	regulatory region 5949	1322 bp proximal