rs30360347 SNP Detail

Summary

• ID
  rs30360347
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103686606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAT TAAATTTACA AGCCTCCACT
  R
  CACTCTCAAT TTCCTCTCAC TTATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45422715	mCV22763076	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss135564175	ENSMUSSNP3386383	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
ss320858429	CHEV_3_103583213	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30360347					SNP	A	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103686606 () rs orientation: forward

Symbol	Name	Function Class
Hipk1	homeodomain interacting protein kinase 1	within coordinates
Rr69882	regulatory region 69882	1806 bp distal
Rr367513	regulatory region 367513	1025 bp downstream
Tssr34851	transcription start site region 34851	1139 bp upstream
Tssr34852	transcription start site region 34852	1113 bp upstream
Tssr34853	transcription start site region 34853	1089 bp upstream
Tssr34854	transcription start site region 34854	1013 bp upstream
Tssr34855	transcription start site region 34855	964 bp upstream