rs30360886 SNP Detail

Summary

• ID
  rs30360886
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122554824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTG TTTTTTTTTT TTTTTGTTTT
  K
  TTTTTGTTTT GTTTTGTTTT GTTTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45920687	mCV24483949	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G
ss133609233	ENSMUSSNP5264983	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30360886					SNP	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122554824 () rs orientation: forward

Symbol	Name	Function Class
Apobec1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	within coordinates
Tssr1999	transcription start site region 1999	323 bp downstream
Tssr58682	transcription start site region 58682	63 bp downstream
Tssr58683	transcription start site region 58683	6 bp upstream
Tssr58684	transcription start site region 58684	542 bp upstream
Tssr62861	transcription start site region 62861	41 bp downstream
Tssr62862	transcription start site region 62862	97 bp downstream
Tssr62863	transcription start site region 62863	126 bp downstream
Tssr62864	transcription start site region 62864	145 bp downstream
Tssr62865	transcription start site region 62865	186 bp downstream
Tssr62866	transcription start site region 62866	312 bp downstream
Tssr62867	transcription start site region 62867	398 bp downstream
Tssr62868	transcription start site region 62868	586 bp downstream
Tssr62869	transcription start site region 62869	798 bp downstream