rs30361232 SNP Detail

Summary

• ID
  rs30361232
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:51461725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCTGGC AAGCCCCAGG
  CTTTGGAATT CCGCCTTGTT CCTCAAAGCC ATTCTTTCAT GCTCTTGGAG TGAGCCCTGG
  GTGTTCAGGC ACGACTTCCT CTTGCCTAGC ACTGCTTCAT ATTTCTCTGG GCTCTCTGAC
  CTGAACTCTC TCCCATTTCC CTCACTTGTA TCCATCCACC TATGCCTCTA CTTCGTTTCC
  K
  GGCAGACATT AGGGCCTCAG TAGAGAGGTC TGTGGGGCTG ATTCGAGGTG GAGGGCCTCC
  CCCCAACAAA GCTCAGTTTA TAGTTCTAAT CAAACAGTCT TGCTGGATCT GCAGTCTTTG
  ACTGGGGGCC TGCCTTACAC TGACTGGCCT TCTGGTCTCC CAGCCAGTCT CTTCCACCTA
  TCAAGTCACC CTACTTTAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46940266	NES10939413	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30361232					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46940266	NES10939413	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:51461725 () rs orientation: forward

Symbol	Name	Function Class
Gpc3	glypican 3	within coordinates
Rr5948	regulatory region 5948	925 bp distal
Rr5949	regulatory region 5949	within coordinates
Rr5950	regulatory region 5950	1076 bp proximal