rs30361436 SNP Detail

Summary

• ID
  rs30361436
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113284862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGG TGCTTCCGCC ATATCCAAGG
  R
  CCCCAGGGCT TTCAGAGCTA AGTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45922588	mCV22332072	ABI	CRAMUS_MOUSE	f	SNP		G	G					A
ss51842518	NES14762346	PERLEGEN	MM_PANEL2	f	SNP	A			A	A	A	G	A	A		G	A	A	G		G
ss133564257	ENSMUSSNP697513	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					A
ss321910482	CHEV_6_113257895	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30361436					SNP	A	G	G	A	A	A	G	A	A	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51842518	NES14762346	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113284862 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	within coordinates
Cpgi17838	CpG island 17838	within coordinates
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	1227 bp upstream
Gm67816	predicted gene, 67816	within coordinates
Rr399829	regulatory region 399829	1228 bp downstream
Rr636484	regulatory region 636484	462 bp distal
Rr636485	regulatory region 636485	7 bp distal
Rr636486	regulatory region 636486	within coordinates
Rr636487	regulatory region 636487	424 bp proximal
Tssr58189	transcription start site region 58189	924 bp downstream
Tssr58190	transcription start site region 58190	671 bp downstream
Tssr58191	transcription start site region 58191	655 bp downstream
Tssr58192	transcription start site region 58192	40 bp downstream
Tssr58193	transcription start site region 58193	16 bp downstream
Tssr62434	transcription start site region 62434	115 bp upstream