rs30361985 SNP Detail

Summary

• ID
  rs30361985
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:51461762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCTCAAA GCCATTCTTT
  CATGCTCTTG GAGTGAGCCC TGGGTGTTCA GGCACGACTT CCTCTTGCCT AGCACTGCTT
  CATATTTCTC TGGGCTCTCT GACCTGAACT CTCTCCCATT TCCCTCACTT GTATCCATCC
  ACCTATGCCT CTACTTCGTT TCCGGGCAGA CATTAGGGCC TCAGTAGAGA GGTCTGTGGG
  R
  CTGATTCGAG GTGGAGGGCC TCCCCCCAAC AAAGCTCAGT TTATAGTTCT AATCAAACAG
  TCTTGCTGGA TCTGCAGTCT TTGACTGGGG GCCTGCCTTA CACTGACTGG CCTTCTGGTC
  TCCCAGCCAG TCTCTTCCAC CTATCAAGTC ACCCTACTTT AGTGATTCGT CGCTTTCTCC
  ACGACAGACC TACTTTTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46940269	NES10939415	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30361985					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46940269	NES10939415	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:51461762 () rs orientation: forward

Symbol	Name	Function Class
Gpc3	glypican 3	within coordinates
Rr5948	regulatory region 5948	962 bp distal
Rr5949	regulatory region 5949	within coordinates
Rr5950	regulatory region 5950	1039 bp proximal