rs30361991 SNP Detail

Summary

• ID
  rs30361991
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:51462577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGTTGTG ATACAAATCT
  GACACATCTG GGACTTCCGC TGTCAACATG TGATGGAGGG TATAACTCTA CTTATTACAG
  GTGGAGGATC TTTTGTCCAA AATGCTCAGG ACTGGAAGTG TTTGGATTTC CCCGCACCCC
  ATCCCCCAAT TTTGGGATAT TGTCTGGTGT TTAATAAGAT ATCCTGTAGA TGAGACTCAC
  R
  TAAAATTTCT TCTTGTTTCC TATATTCTTT ATCTACATAA TTCAAACCAC CTAGGGGTAT
  GGGGTATTTG TAGTGTACCT ACATTTTGGC TGTGACCCAT CACGTGAGGT CAGGGGTGGA
  ATGCTTCCAA TGCTGGCATC CTATCAAGCA TCAGGAAGCT CCGGATGCTG AGGCAGGACT
  TGGGAATTTT AGTGTTCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46940275	NES10939330	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30361991					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46940275	NES10939330	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:51462577 () rs orientation: forward

Symbol	Name	Function Class
Gpc3	glypican 3	within coordinates
Rr4206	regulatory region 4206	1424 bp proximal
Rr5948	regulatory region 5948	1777 bp distal
Rr5949	regulatory region 5949	577 bp distal
Rr5950	regulatory region 5950	224 bp proximal
Rr5951	regulatory region 5951	1623 bp proximal