rs30362451 SNP Detail

Summary

• ID
  rs30362451
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48724024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGA TGGGTGGAGC AGATGCGAGT
  R
  AAAATGTTTG TTTTGGTTTT AGTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45920313	mCV25192948	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss133166455	ENSMUSSNP5348752	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321794605	CHEV_6_48697089	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs30362451					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48724024 () rs orientation: forward

Symbol	Name	Function Class
Gimap5	GTPase, IMAP family member 5	within coordinates
Gm28053	predicted gene, 28053	within coordinates
Rr135565	regulatory region 135565	224 bp distal
Rr146257	regulatory region 146257	within coordinates
Rr368069	regulatory region 368069	931 bp downstream
Rr399641	regulatory region 399641	295 bp downstream
Rr399642	regulatory region 399642	559 bp upstream
Tssr1832	transcription start site region 1832	573 bp downstream
Tssr56207	transcription start site region 56207	910 bp downstream
Tssr56208	transcription start site region 56208	878 bp downstream
Tssr56209	transcription start site region 56209	856 bp downstream
Tssr56210	transcription start site region 56210	788 bp downstream
Tssr56211	transcription start site region 56211	372 bp downstream
Tssr56212	transcription start site region 56212	834 bp upstream
Tssr60779	transcription start site region 60779	986 bp upstream
Tssr60780	transcription start site region 60780	411 bp downstream
Tssr60781	transcription start site region 60781	445 bp downstream
Tssr60782	transcription start site region 60782	651 bp downstream