rs30362650 SNP Detail

Summary

• ID
  rs30362650
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149757025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTAAAAAA TGACAGATGA ATGCGGATGT TTTTCTGAGA
  AAATAGAATT ACACAGAACC TTGATAACTA TGATTTTCCT TCAAGTAGCA TATATACGAC
  Y
  GGAATTGTTA CTACTTACAA GCAAACTACA TATTATAATC TATTTGAACT AGTTCTATTG
  ATATAAAAAG ACCACCCATT AACATACTCC CTCCTAATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45422148	mCV24048358	ABI	CRAMUS_MOUSE	f	SNP		T					T		C
ss51056648	NES13434293	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T		C	C	T	T	T	C	T	T
ss136077746	ENSMUSSNP1669721	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30362650					SNP	T	T	C	T	T	T	T	C	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51056648	NES13434293	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149757025 () rs orientation: forward

Symbol	Name	Function Class
Rr587358	regulatory region 587358	673 bp distal
Tssr32377	transcription start site region 32377	1657 bp downstream