rs30363655 SNP Detail

Summary

• ID
  rs30363655
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97805550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCT TGGGATCTCA GACTGATTTC
  Y
  AGTCTGTTCT TGAACCTAAA ATGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45919542	mCV23115506	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss51375333	NES13725667	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T	C		C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30363655					SNP	C	C	T	C	T	T	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51375333	NES13725667	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97805550 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Tssr1945	transcription start site region 1945	1273 bp downstream
Tssr57866	transcription start site region 57866	1620 bp downstream
Tssr57867	transcription start site region 57867	1347 bp downstream
Tssr57868	transcription start site region 57868	1325 bp downstream
Tssr57869	transcription start site region 57869	1287 bp downstream
Tssr57870	transcription start site region 57870	1128 bp downstream
Tssr57871	transcription start site region 57871	1110 bp downstream
Tssr57872	transcription start site region 57872	340 bp downstream
Tssr57873	transcription start site region 57873	294 bp downstream
Tssr57874	transcription start site region 57874	277 bp downstream
Tssr57875	transcription start site region 57875	257 bp downstream
Tssr57876	transcription start site region 57876	227 bp downstream
Tssr57877	transcription start site region 57877	671 bp upstream
Tssr57878	transcription start site region 57878	715 bp upstream
Tssr57879	transcription start site region 57879	731 bp upstream
Tssr57880	transcription start site region 57880	784 bp upstream
Tssr57881	transcription start site region 57881	984 bp upstream
Tssr57882	transcription start site region 57882	1082 bp upstream