rs30363839 SNP Detail

Summary

• ID
  rs30363839
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144993258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCT AGGCTTCCCA CCCGGTCCCA
  R
  GTCTGCCTTG TATCTTCCCG CAGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45920824	mCV23990287	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss133960844	ENSMUSSNP1173514	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322067430	CHEV_6_144996052	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30363839					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144993258 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	581 bp proximal
Gm15687	predicted gene 15687	5 bp upstream
Gm26666	predicted gene, 26666	27 bp upstream
Rr145931	regulatory region 145931	1857 bp distal
Rr145932	regulatory region 145932	within coordinates
Tssr2055	transcription start site region 2055	1515 bp downstream
Tssr59519	transcription start site region 59519	1006 bp upstream
Tssr64030	transcription start site region 64030	9 bp upstream
Tssr64031	transcription start site region 64031	within coordinates
Tssr64032	transcription start site region 64032	73 bp downstream
Tssr64033	transcription start site region 64033	104 bp downstream
Tssr64034	transcription start site region 64034	132 bp downstream
Tssr64035	transcription start site region 64035	193 bp downstream
Tssr64036	transcription start site region 64036	1053 bp downstream
Tssr64037	transcription start site region 64037	1069 bp downstream
Tssr64038	transcription start site region 64038	1124 bp downstream
Tssr64039	transcription start site region 64039	1144 bp downstream
Tssr64040	transcription start site region 64040	1163 bp downstream
Tssr64041	transcription start site region 64041	1178 bp downstream
Tssr64042	transcription start site region 64042	1198 bp downstream
Tssr64043	transcription start site region 64043	1217 bp downstream
Tssr64044	transcription start site region 64044	1277 bp downstream
Tssr64045	transcription start site region 64045	1307 bp downstream