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rs30364400 SNP Detail
Summary
  • ID
    rs30364400
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:137547641 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GGTCT ACACACATCT TCTGTCATAA
    Y
    TAACGCCTTT GAGCAAAGCC CCCAT                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss45921824 mCV24060098 ABI CRAMUS_MOUSE f SNP C C C T C
ss48108418 NES11849828 PERLEGEN MM_PANEL2 f SNP C C C T C C C C C T T C C T C
ss133873233 ENSMUSSNP2385721 ENSEMBL ENSEMBL_Sanger f SNP C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs30364400 SNP C C C C T C C T C C C T T C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss48108418 NES11849828 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:137547641 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Eps8 epidermal growth factor receptor pathway substrate 8 within coordinates
Rr640223 regulatory region 640223 768 bp distal
Rr640224 regulatory region 640224 within coordinates
Rr640225 regulatory region 640225 364 bp proximal
Rr640226 regulatory region 640226 682 bp proximal
Tssr63894 transcription start site region 63894 103 bp downstream
Tssr63895 transcription start site region 63895 142 bp downstream
Tssr63896 transcription start site region 63896 169 bp downstream
Tssr63897 transcription start site region 63897 364 bp downstream
Tssr63898 transcription start site region 63898 395 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory