rs30364568 SNP Detail

Summary

• ID
  rs30364568
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37696039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG GAGCCTTGAT TAACCTTTAA
  R
  GAAAGCTAAG TCCACACCGT CCGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45421957	mCV25185826	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss134810002	ENSMUSSNP941507	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320711457	CHEV_3_37540812	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs30364568					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37696039 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	474 bp distal
Gm42922	predicted gene 42922	665 bp upstream
Rr575523	regulatory region 575523	1800 bp distal
Rr575524	regulatory region 575524	427 bp distal
Rr575525	regulatory region 575525	1093 bp distal
Rr575526	regulatory region 575526	985 bp distal
Spry1	sprouty RTK signaling antagonist 1	Intron
Tssr28909	transcription start site region 28909	1978 bp downstream
Tssr28910	transcription start site region 28910	1947 bp downstream
Tssr28911	transcription start site region 28911	1926 bp downstream
Tssr28912	transcription start site region 28912	1904 bp downstream
Tssr28913	transcription start site region 28913	1376 bp upstream
Tssr28914	transcription start site region 28914	1834 bp upstream