rs30365151 SNP Detail

Summary

• ID
  rs30365151
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:125199610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGCA AGTTCACTTC AAGATCTAGT
  Y
  CTGTTTATTG TATGCGTGTG AGTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45923193	mCV22303677	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		C
ss60940113	NES16188580	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	C	C		C	C	C	C		C
ss133614212	ENSMUSSNP5645119	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss321938666	CHEV_6_125172665	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30365151					SNP	T	T	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60940113	NES16188580	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:125199610 () rs orientation: forward

Symbol	Name	Function Class
Rr133010	regulatory region 133010	791 bp proximal
Rr133011	regulatory region 133011	1591 bp proximal
Rr147527	regulatory region 147527	within coordinates
Rr368188	regulatory region 368188	159 bp downstream
Tapbpl	TAP binding protein-like	1286 bp downstream
Tssr58933	transcription start site region 58933	912 bp downstream
Tssr58934	transcription start site region 58934	806 bp downstream
Tssr58935	transcription start site region 58935	744 bp downstream
Vamp1	vesicle-associated membrane protein 1	341 bp downstream