rs30365940 SNP Detail

Summary

• ID
  rs30365940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128071222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACCGCTCCG AGTCATTAAT CATCAGGGAA ATAGAATCGG
  CCATAGTGAA AGGCTGCCTC ACACCTAGGG CAGCCTTAAT GGAAAAGAAA AAGAAGAAAT
  Y
  GACAGTAACA AGTGCTGGCA AGGATGTGGA GAAACTGGAA CCCTCCCACA TGGCTGGTGG
  GAGCCAGGGT GATACAGCCA TTGTACAAAC AGCCTGCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45919855	mCV22305995	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	T
ss133637225	ENSMUSSNP4299696	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		T
ss321943865	CHEV_6_128044277	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30365940					SNP	C	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128071222 () rs orientation: forward

Symbol	Name	Function Class
Gm55163	predicted gene, 55163	658 bp downstream
Rr639180	regulatory region 639180	1172 bp distal
Rr639181	regulatory region 639181	923 bp proximal
Rr639182	regulatory region 639182	1131 bp proximal
Tspan9	tetraspanin 9	within coordinates