rs30370894 SNP Detail

Summary

• ID
  rs30370894
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46037579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTTACAT AGACAGTTAC
  AAGCTGCTCT GTGGGTGCTG GGAATTCAAC CTAGGTCCTA CGGAAGAACA ACCAGTGCTT
  GTAACCCCTG AGCCATCTTG CCAACCCCAA TGTATTTTAT TTTAGCTTAA GGTCATTTTA
  AGGTAAAAAT TGAAACAGTC TAAAATGTTT TTATGATCAT TGAAAGGATA ATGTTCTGGG
  M
  ACATTGAGGT AAATGTTGAC TGTTGTTTCT GACTTCTGTT TTAAATCGTG GCCTTATATA
  ACATGGGGGC TGCAGCTCAG TTGTGTCATC CTAGCATCCT CAGGGAGCTG CCCAGTGCTC
  AGCCTGTCTC TGTGAGAATG AAGGTAGATG GGGGCAGAAG CCTTTGGCCT TCAGTTTCTG
  CACCAGTGAT CCTGACAAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46400786	mCV25177273	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A	A
ss136423301	ENSMUSSNP4952436	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30370894					SNP	C	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46037579 () rs orientation: forward

Symbol	Name	Function Class
Rr678056	regulatory region 678056	69 bp proximal
Rr678057	regulatory region 678057	1138 bp proximal
Sik3	SIK family kinase 3	within coordinates
Tssr84829	transcription start site region 84829	952 bp upstream