rs30371237 SNP Detail

Summary

• ID
  rs30371237
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67183085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGGTGAGT CACCCTTCAA ATGACTGTCT GTCTTCCTAG
  GTGGCAGGTC TGCTGGTTCT GAATTACAGT AATGACTATA ACCACTGGCT GGCTACCAAG
  W
  GTCTGGGTCA ATGGCTGCAG GAGGAAAAGG TGAGAAGTCA GATAGGTCTA TGGGTCTATG
  GAAACCTGGG AGCTTATGCA TTTCTGGATA TCGCTACTGT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47441327	NES11018893	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30371237					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441327	NES11018893	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67183085 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr17157	regulatory region 17157	within coordinates
Rr34361	regulatory region 34361	within coordinates
Tssr7192	transcription start site region 7192	976 bp downstream
Tssr7193	transcription start site region 7193	873 bp upstream
Tssr7194	transcription start site region 7194	893 bp upstream
Tssr7195	transcription start site region 7195	947 bp upstream
Tssr7196	transcription start site region 7196	976 bp upstream
Tssr7197	transcription start site region 7197	1067 bp upstream