rs30371240 SNP Detail

Summary

• ID
  rs30371240
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67183177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGA GCTTATGCAT TTCTGGATAT
  Y
  GCTACTGTAG ACAGGAGATT GTTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47441330	NES11018894	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	T	C	T	T	T		C	T	T	C		T
ss144537499	ENSMUSSNP5041175	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T
ss319761767	CHEV_1_67190592	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30371240					SNP	T	T	T	T	C	T	C	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441330	NES11018894	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67183177 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr17157	regulatory region 17157	within coordinates
Rr34361	regulatory region 34361	within coordinates
Tssr7192	transcription start site region 7192	1068 bp downstream
Tssr7193	transcription start site region 7193	781 bp upstream
Tssr7194	transcription start site region 7194	801 bp upstream
Tssr7195	transcription start site region 7195	855 bp upstream
Tssr7196	transcription start site region 7196	884 bp upstream
Tssr7197	transcription start site region 7197	975 bp upstream