rs30371596 SNP Detail

Summary

• ID
  rs30371596
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:35947000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTATGCCT GCTCTGTCTG
  CATGTATGTC ACCCAGAAGA GGGTGTTGTA TTCTCTGAAA CTGGTTTCAA ACAGTTGACG
  GCTATCATGC AGATGTACGA AGAGAACCTG GATTTTTTTT TTTGAAGAAC AGCTAGTGTT
  CTTAACCACT GAGAAATCTC ACCAGGAGTA AGAACAAATT CTTATTACAC ACTGATCTTA
  M
  AACAATCTGT TAAGCAGATG TTTAATGAGA ACTGTAAAAG TAAAAAGCAG CAAAGAACAT
  TTTAATTTCA AAAGTTAAAT ACATGCTTTT CATTTATTAG GTTTTTTTTC AACAAGAATT
  TTAGTTAATT GGAATGTTAT AAATATACAG AGTCTATAAA AGTCCTTGTG AGTGATCAGT
  ATGTTGTTTA TAATTATTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47440405	NES11516730	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30371596					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47440405	NES11516730	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:35947000 () rs orientation: forward

Symbol	Name	Function Class
Eri1	exoribonuclease 1	within coordinates
Rr662194	regulatory region 662194	310 bp distal
Rr662195	regulatory region 662195	407 bp distal
Rr662196	regulatory region 662196	312 bp distal
Rr662197	regulatory region 662197	151 bp distal
Tssr80937	transcription start site region 80937	713 bp downstream