rs30371639 SNP Detail

Summary

• ID
  rs30371639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67198232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGAGAGCA AACCTTTCTT
  CGCTGTGCAG TTCCACCCAG AGGTCAGCCC GGGGCCAACA GACACTGAGG TATGCCAGCC
  AGATGATGTC TGTTATATAC TTGAAAAAAA ATCAGAGATG CTTGTGTGTG AAGACTCAAG
  AAACCAAAAT AATTGGTACA TAATATTCTC AGGGAGTGTG TTTTGGTACC ATGCATTTTG
  Y
  ATTAAATTCC CCCACGAATA TCATAGAGTA AATTTTAATC TTTTCTTAAA TTTAAAGGGG
  GAAAGCCCTT AAGAAGCTCA AAGCAATGTT ATGGTGCTAT TTTATGCATT ATCATTCTAA
  TATATTTAGT TCTGAAATTT ACAATTGTTG TGCTATGCAA ATGAATTCCC TCTTGCTCTT
  TCCATCTCAT AACTGGAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47441829	NES11017903	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30371639					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441829	NES11017903	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67198232 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Tssr7208	transcription start site region 7208	1250 bp downstream
Tssr7209	transcription start site region 7209	309 bp upstream
Tssr7210	transcription start site region 7210	348 bp upstream
Tssr7211	transcription start site region 7211	360 bp upstream
Tssr7212	transcription start site region 7212	1818 bp upstream