rs30371663 SNP Detail

Summary

• ID
  rs30371663
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67169945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGTAAT AAACATGAAG
  CTGGTTTGAA GCTTTATATG CTAATTATAA ATTCCGTTTC AATTTTGAAT ACACTTTCCA
  GGAATGAACT CTCTAAGTTA GCTTAGTATA ACCCCAGGGA CACTTTTGAA GAGCATCTTG
  AGGGGAAATT TAGCTGTGTG ACTTCCATTA TTACTTGTCC CATTGTTCTT ATTCTGGAAA
  W
  TTTTTTGAAA CATTGACTCT TTTAAATGTG ATCTCAAACT GAGAGCCTTA AAAAGCAAAG
  AGTTCTGGTC ATTTATAGCC CTCTGAAGCT ATCCAGTCAC CTCGTGAAAA AATGAAAATA
  AACCTGTACA TGTAGTTTCA AAGTGAATTT AAATTTTCCT ACCAAATTAA AAGCCTTAAA
  AAGAAGAGTG GTTTGGGGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47440973	NES11019582	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30371663					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47440973	NES11019582	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67169945 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Tssr7186	transcription start site region 7186	1853 bp downstream
Tssr7187	transcription start site region 7187	1738 bp downstream
Tssr7188	transcription start site region 7188	1634 bp downstream
Tssr7189	transcription start site region 7189	911 bp upstream