rs30371992 SNP Detail

Summary

• ID
  rs30371992
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86350251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATT ATAGCCCAGG TAGTCTGAAT
  K
  CCTTGTTGTA ATGGTTACTT CTAAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46399904	mCV22798783	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss136756102	ENSMUSSNP3410049	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss323056348	CHEV_9_86361805	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30371992					SNP	G	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86350251 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22102	CpG island 22102	343 bp distal
Dop1a	DOP1 leucine zipper like protein A	within coordinates
Rr684098	regulatory region 684098	1034 bp distal
Rr684099	regulatory region 684099	1096 bp distal
Rr684100	regulatory region 684100	287 bp distal
Tssr2956	transcription start site region 2956	234 bp downstream
Tssr86391	transcription start site region 86391	1028 bp downstream
Tssr86392	transcription start site region 86392	979 bp downstream
Tssr86393	transcription start site region 86393	937 bp downstream