rs30372233 SNP Detail

Summary

• ID
  rs30372233
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45015641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTCCTGG ATGTCGCTTA
  GGAATTTTTG TATTCTCTCC ACCCCAGAAG CATATCTACT CCTCCATAAC TACGTGGGAG
  ACGACAGAGA GAGGAATAAG TGGAGAGTCA GAGGGCACCT ACATGACCAT GGTGAGAACT
  ATTCTGGGTC CTACCTGGGC TAGGTTTCTG GAATGGGAGG AGGTGTTGGG GAGGATACCC
  R
  TGGCTCCGGG AGGGAGGCAA GAGTGGTGAG GCCTCCTGAA GAGGTTGTTT GTAGAGGGCA
  GGGTTTTCCC CCAAGCAGTA GGAAACAGGG AGAACAAACC CTGCTTAGGA CTAAAGTTGC
  CAGTCAAGAG CACCAGCACC ATAGGTAGGA GCCTTCCGCT GTGCCCAGCT CTGGCTAAAC
  TAGATGTAAT AAAGTATGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46399704	mCV24046733	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30372233					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45015641 () rs orientation: forward

Symbol	Name	Function Class
Jaml	junction adhesion molecule like	within coordinates
Rr677840	regulatory region 677840	400 bp distal
Rr677841	regulatory region 677841	1376 bp proximal
Tssr84725	transcription start site region 84725	1459 bp downstream
Tssr84726	transcription start site region 84726	481 bp downstream
Tssr84727	transcription start site region 84727	450 bp downstream
Tssr84728	transcription start site region 84728	423 bp downstream