rs30372557 SNP Detail

Summary

• ID
  rs30372557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:135710092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTA CGTTCTTTGT AAATGTCAGT
  Y
  AAGTCCACGT GCTCCCAGTG AGGCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45923599	mCV23370840	ABI	CRAMUS_MOUSE	f	SNP		T					C		T
ss51451017	NES14001707	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C	T	T	T		C	T	T	C		T
ss133816901	ENSMUSSNP6932381	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss321989805	CHEV_6_135683112	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30372557					SNP	T	T	T	T	T	T	C	C	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51451017	NES14001707	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:135710092 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18096	CpG island 18096	within coordinates
Gm14329	predicted gene 14329	within coordinates
Grin2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	within coordinates
Tssr63774	transcription start site region 63774	1827 bp upstream
Tssr63775	transcription start site region 63775	327 bp upstream
Tssr63776	transcription start site region 63776	493 bp downstream
Tssr63777	transcription start site region 63777	513 bp downstream
Tssr63778	transcription start site region 63778	571 bp downstream