rs30373026 SNP Detail

Summary

• ID
  rs30373026
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142264513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTG GTTGTACAAC CTTGCAATCC
  Y
  ACCAGCAATG GAGGAGTGTT CCCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45423683	mCV23580125	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss136014976	ENSMUSSNP864654	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30373026					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142264513 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	1274 bp upstream
Rr398085	regulatory region 398085	1558 bp upstream
Rr586453	regulatory region 586453	832 bp proximal
Rr586454	regulatory region 586454	1670 bp proximal
Tssr32157	transcription start site region 32157	1312 bp upstream
Tssr32158	transcription start site region 32158	1356 bp upstream
Tssr32159	transcription start site region 32159	1402 bp upstream
Tssr32160	transcription start site region 32160	1441 bp upstream
Tssr32161	transcription start site region 32161	1599 bp upstream
Tssr32162	transcription start site region 32162	1786 bp upstream
Tssr32163	transcription start site region 32163	1820 bp upstream
Tssr32164	transcription start site region 32164	1853 bp upstream
Tssr32165	transcription start site region 32165	1869 bp upstream