rs30373036 SNP Detail

Summary

• ID
  rs30373036
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106699056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCGG CTCCTCCCCC TTCCCCGCTC
  S
  GGAGCCTCGC GCCAACGTTA CACAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46400509	mCV25234274	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss136940627	ENSMUSSNP951958	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323187386	CHEV_9_106724188	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30373036					SNP	G	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106699056 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22276	CpG island 22276	within coordinates
Dcaf1	DDB1 and CUL4 associated factor 1	17 bp upstream
Rr368848	regulatory region 368848	within coordinates
Rr401655	regulatory region 401655	589 bp upstream
Rr686401	regulatory region 686401	1985 bp distal
Rr686402	regulatory region 686402	within coordinates
Rr686403	regulatory region 686403	28 bp proximal
Tssr86935	transcription start site region 86935	37 bp upstream
Tssr86936	transcription start site region 86936	142 bp upstream
Tssr86937	transcription start site region 86937	166 bp upstream