rs30373071 SNP Detail

Summary

• ID
  rs30373071
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67183492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGG GCACATAGTC ATTCCATCCA
  W
  TAGTGGTTTT GTTTTTTTTT GTTTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	DBA/2J	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss47441351	NES11018906	PERLEGEN	MM_PANEL2	f	SNP	A		T			A		A
ss144537575	ENSMUSSNP7100122	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss319761780	CHEV_1_67190907	CHEVERUD	SCREENING_POP	f	SNP					A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	DBA/2J	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs30373071					SNP	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441351	NES11018906	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67183492 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr17157	regulatory region 17157	within coordinates
Rr34361	regulatory region 34361	within coordinates
Tssr7192	transcription start site region 7192	1383 bp downstream
Tssr7193	transcription start site region 7193	466 bp upstream
Tssr7194	transcription start site region 7194	486 bp upstream
Tssr7195	transcription start site region 7195	540 bp upstream
Tssr7196	transcription start site region 7196	569 bp upstream
Tssr7197	transcription start site region 7197	660 bp upstream