rs30373467 SNP Detail

Summary

• ID
  rs30373467
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67199243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCTAAGT TGCTTCTTAG
  ATATTTGCAG TTTTTTTTTT TTTTTGGTCC TTCCTATTGT TTGGAAATAT CAGTTCACAA
  TAGTCAACCC AGTATGGTTT TAACTACTCA TGATGAACCT AAGAAAAGCT AAGCAGTAAA
  ATGGTTACTA TCTTCATGCA ATTCATGCTA AATATTTTGT TTTAAATTTA AAATTTAGCT
  K
  CAAGACCATG TTAGCACCTC AGATTAGAAA AGATGCAATT ATTTCATAGA ATTTGAGCAC
  TGTGACTGGC CATTTTATTT ATTTTTTGGT CTTTCCAAAT AATTGCAAAG TGAATACTTT
  TGTTGACATT TGTGATGTCT AGTGAAGCAA CAGAAGTAAG CTCACTGGTA AAGTTTAAGA
  ATAATCTTTC AGGGTCATAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47441847	NES11017818	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30373467					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441847	NES11017818	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67199243 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Tssr7209	transcription start site region 7209	691 bp downstream
Tssr7210	transcription start site region 7210	652 bp downstream
Tssr7211	transcription start site region 7211	613 bp downstream
Tssr7212	transcription start site region 7212	807 bp upstream