rs30373491 SNP Detail

Summary

• ID
  rs30373491
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89338110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATG CTGTCCTCTG TGCCTTTAGA
  Y
  ACCTTCGGTG GGCTCCAAGC TGCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45923923	mCV24906644	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss321852057	CHEV_6_89311122	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30373491					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89338110 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17713	CpG island 17713	129 bp proximal
Plxna1	plexin A1	within coordinates
Rr146639	regulatory region 146639	within coordinates
Tssr62008	transcription start site region 62008	1425 bp downstream
Tssr62009	transcription start site region 62009	1453 bp downstream