rs30373699 SNP Detail

Summary

• ID
  rs30373699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10665036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGGTTGTGTC TCCAGCACAG CATAACACTG TGCACTTGCC AGGTAGAGGT GAGAGCTTAC
  TCTTGACTAC TTTGAGAGTT CTAGGACAGC ACAGGGGACT TGAGACCTGA GTACCCAGGG
  ACCCCATGAG GTAGTAAAGG GGAGGGAGTT CTGACCAATG GGGACAATGA TGATCATTTT
  AGATCTAGAA TATGAAATAG AAAAAGTGGG AGATCTTGAT GAAATTCGAT GACCCAAAAG
  AGAAACTTAC AAGATGGAAG TCCCCCCTCA AAAATAAATA AATAAATAAA TAAATAAAAT
  Y
  GCAACTCTGT TGACTGATTA GAACTTCTTG ATTGTGGAAA GCTGGGATGT TACAGGGTCC
  AATTAACTGA TAATTATTGT TATTCTCCTT AATAAATGTT GCTCACTTCT GTGCCTTACC
  TCATATCAAT GTGATTATCG GGTAAACCTT TTGGGATGCA CTAACTCAGC AGACCCCAAA
  GCTAAAATGT AATCAAATAG CACCTCAGAC CCAAACAGAG ATTTTCCCTA ATTTCTCATT
  ACCCACTGGC CTGATGGTCC CAGCAATGTA TTTGTAAAAT GCCTTGGGGT AGCCTTATTC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39675900	mCV24892400	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30373699					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10665036 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10618	CpG island 10618	722 bp proximal
Tssr155086	transcription start site region 155086	1052 bp upstream
Tssr155087	transcription start site region 155087	1072 bp upstream
Tssr155088	transcription start site region 155088	1246 bp upstream
Tssr155089	transcription start site region 155089	1556 bp upstream
Tssr155090	transcription start site region 155090	1584 bp upstream
Vps37c	vacuolar protein sorting 37C	1063 bp upstream