rs30374003 SNP Detail

Summary

• ID
  rs30374003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44054854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGC AGGCCTCAGG GTTCCACGGC
  Y
  CCTCCCTGGA TTCAAGCAGA CCCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46399927	mCV25148512	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss136391631	ENSMUSSNP6680819	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss322940209	CHEV_9_43951640	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30374003					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44054854 () rs orientation: forward

Symbol	Name	Function Class
Cbl	Casitas B-lineage lymphoma	within coordinates
Mcam	melanoma cell adhesion molecule	830 bp downstream
Rr677565	regulatory region 677565	564 bp proximal
Rr677566	regulatory region 677566	891 bp proximal
Rr677567	regulatory region 677567	984 bp proximal
Tssr89112	transcription start site region 89112	970 bp downstream
Tssr89113	transcription start site region 89113	1156 bp downstream