rs30374017 SNP Detail

Summary

• ID
  rs30374017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67183849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATTATTT CTATAGTTTA
  AATGCCAATT CCTTATCAGA GTATTCACCT TGAGTGTTAG GAATTCTTAG TATTAACAGA
  CCTACTATAT TTAGTTTCAT CTTCACTGTT ACTATAGCTG TTTTTGTTCA ACTGTGGCTG
  ATTCTGTAAT GTAGACACCA TAATTATAAT ACTGTCAAGC ACCAAGAAAG TTCTGCCTTT
  Y
  CAATGAGTGT TTACCTATTG GGTTCAATGT TATTGCTTTG TGACAAAATA AAAATAAAAT
  CAAAGATCTT GGTTCTGGAT TCCTAGGTCC TAGTCTTCCT GAAACACAAA GGGCATAGGA
  AGGCTCTTTG TTGTGGCCCA CGTTACACTG ATTTCTTCTG AACCATTAAA ACAAGTTATC
  TTTATTTGGC TGATAGCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47441357	NES11018911	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30374017					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441357	NES11018911	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67183849 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr17157	regulatory region 17157	249 bp distal
Rr34361	regulatory region 34361	within coordinates
Tssr7192	transcription start site region 7192	1740 bp downstream
Tssr7193	transcription start site region 7193	109 bp upstream
Tssr7194	transcription start site region 7194	129 bp upstream
Tssr7195	transcription start site region 7195	183 bp upstream
Tssr7196	transcription start site region 7196	212 bp upstream
Tssr7197	transcription start site region 7197	303 bp upstream