rs30374020 SNP Detail

Summary

• ID
  rs30374020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67183860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGT TCTGCCTTTC CAATGAGTGT
  Y
  TACCTATTGG GTTCAATGTT ATTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47441360	NES11018914	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C		T	C	C	T		C
ss144537600	ENSMUSSNP3483492	ENSEMBL	ENSEMBL_Sanger	f	SNP	C						C
ss319761784	CHEV_1_67191275	CHEVERUD	SCREENING_POP	f	SNP									C					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30374020					SNP	C	C	T	C	C	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47441360	NES11018914	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67183860 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr17157	regulatory region 17157	260 bp distal
Rr34361	regulatory region 34361	within coordinates
Tssr7192	transcription start site region 7192	1751 bp downstream
Tssr7193	transcription start site region 7193	98 bp upstream
Tssr7194	transcription start site region 7194	118 bp upstream
Tssr7195	transcription start site region 7195	172 bp upstream
Tssr7196	transcription start site region 7196	201 bp upstream
Tssr7197	transcription start site region 7197	292 bp upstream